NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334931_000035

Scaffold Ga0334931_000035


Overview

Basic Information
Taxon OID3300034377 Open in IMG/M
Scaffold IDGa0334931_000035 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)127403
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010270Metagenome306Y
F014784Metagenome / Metatranscriptome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0334931_000035_110378_111136F014784AGGGGGMTDWKAERAGRLRDFFGLSPDAELLAPEARGFEAPPERAGGLSHFHIEWHVVPSAEALPLDDAYAARLYPAASREFTRGREHEGSYREQLFRGHARHQGLVVGVETTQKPRYLPGNKQFYGTPYGHDPAADPFAPYLGRAGMVNGTRYAHNYLSLREFVRVLNDDWRARSILPPGYRATICPPAVFNLVGALFHPEWSETETLELGFYRDEQGNAKCYAVGSNGPGDFSYVRAVEGEEEWALAGFRVALVPE
Ga0334931_000035_95158_95697F010270GGAGGMAVAGILRTTLHAAASPKNRPEVKTDGLEHLDRKTALILYAVAEAVLGEGFLKKAPTFVETVDDYLNYQRQSQRDLFLTALLIAETRLFSLVTVGNLRGFSHLPLADRRKVLEKLRASGTQQNRNIYAAFVNVSAATYYASELTWPDLGYPGVSVDHPEILNRLPPIPWRPGDPRPIEP
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