NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326787_023558

Scaffold Ga0326787_023558


Overview

Basic Information
Taxon OID3300034363 Open in IMG/M
Scaffold IDGa0326787_023558 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S96 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)835
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008982Metagenome / Metatranscriptome324Y

Sequences

Protein IDFamilyRBSSequence
Ga0326787_023558_242_799F008982N/AMAYGTPMNFTFGIFDPEDGNFYKRITTRLYIPQTTSAILSGSVLNRLLYFTIKDDFRVWVLDLSLKLFLGNITLPPASKNIMLAHNPVTQIMYGYTPGPEGLFRFDNPTSRTNIANIDFTGVSLVPSSTIDPIENTMWISLWGIPSRAWMKIDLNKNTDNVRWTPVGSVEGYFDFNPYTYTRVDE
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