NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335039_0077099

Scaffold Ga0335039_0077099


Overview

Basic Information
Taxon OID3300034355 Open in IMG/M
Scaffold IDGa0335039_0077099 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1963
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021479Metagenome / Metatranscriptome218Y
F048104Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0335039_0077099_1616_1951F021479N/AMADAPSATIWGVTALPKRVASVGVIALTKFIAAQQVAPTCPKRMEFARYMVEHEFAKFVDVQRIYFSPECAKIISKTRMFALQSKKLQWSSPQSMKLQWWGKTTSAIGTRT
Ga0335039_0077099_960_1658F048104N/AMVGEDDFSNRNEDLNNLVVDLTSDEDLNNLVVDLSSDISVIEPSHNLTIMDINDLPFGIIQEYVGMNNWENAITFAGVCKSWRIAAEPHLAMIGIAPMEGGRQRKLNVTGFLRYLEQQVKFRFADRIYVPCGLKTEKLFYSEVRLRCEQMTELIHDKWIKTTGNMEYVLEGQSRHACYRMYKHDTPNIPGVNAYIKYEWDKTMKVQLVSEGQFVQLFTNRRRSRIQTSFLRY
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