Scaffold Ga0335013

Basic Information
Taxon OID	3300034284 Open in IMG/M
Scaffold ID	Ga0335013_0047760 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034284 Open in IMG/M

Scaffold ID

Ga0335013_0047760 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3116
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3116

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F032529	Metagenome / Metatranscriptome	179	N
F036545	Metagenome / Metatranscriptome	169	N
F061798	Metagenome / Metatranscriptome	131	N
F063374	Metagenome / Metatranscriptome	129	Y
F075668	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335013_0047760_1125_1475	F032529	N/A	MAESRRLIDVTETERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGDSEEQIRRRALAWEKLYEIRQVPVKESTSLKETNPEDTSCEVTSSTDTTFENEAKK
Ga0335013_0047760_1492_1800	F061798	N/A	MAEGRFIDLKSQDIKQIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSEIGNPSEGKTDS
Ga0335013_0047760_2177_2653	F036545	N/A	MSNTTDETLKHFLKNERREKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDSIDITQDWDSDFNLEQFKKLQERMTFFKHLHPNWRLGSREVAEYSNCTCELCYQVRYPMKKDDLEEIKSLTIS
Ga0335013_0047760_2650_2940	F063374	N/A	MSKKFRKIDNFNLSLTIPAYSKIMSTGSERVSKLNLFPQIQESYLGKNRFKSIPQNPGKTLRQFPSVSGNGLSLHTEILIKTVKVIPEESPHILIK
Ga0335013_0047760_560_1069	F029090	GAG	MPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNSIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLTKGYTKNFKWFKKLKNNLKYVYGRSPKWALHYQESALPDLGNLTENDFN
Ga0335013_0047760_75_344	F075668	N/A	MSYEYSVNDVRCLVMYTLNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSKSNKSYRKINRLNQFYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335013_0047760

Overview

Ecosystem & Geography

Associated Families

Sequences