Basic Information | |
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Taxon OID | 3300034284 Open in IMG/M |
Scaffold ID | Ga0335013_0047760 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3116 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F029090 | Metagenome / Metatranscriptome | 189 | N |
F032529 | Metagenome / Metatranscriptome | 179 | N |
F036545 | Metagenome / Metatranscriptome | 169 | N |
F061798 | Metagenome / Metatranscriptome | 131 | N |
F063374 | Metagenome / Metatranscriptome | 129 | Y |
F075668 | Metagenome / Metatranscriptome | 118 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335013_0047760_1125_1475 | F032529 | N/A | MAESRRLIDVTETERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGDSEEQIRRRALAWEKLYEIRQVPVKESTSLKETNPEDTSCEVTSSTDTTFENEAKK |
Ga0335013_0047760_1492_1800 | F061798 | N/A | MAEGRFIDLKSQDIKQIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSEIGNPSEGKTDS |
Ga0335013_0047760_2177_2653 | F036545 | N/A | MSNTTDETLKHFLKNERREKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDSIDITQDWDSDFNLEQFKKLQERMTFFKHLHPNWRLGSREVAEYSNCTCELCYQVRYPMKKDDLEEIKSLTIS |
Ga0335013_0047760_2650_2940 | F063374 | N/A | MSKKFRKIDNFNLSLTIPAYSKIMSTGSERVSKLNLFPQIQESYLGKNRFKSIPQNPGKTLRQFPSVSGNGLSLHTEILIKTVKVIPEESPHILIK |
Ga0335013_0047760_560_1069 | F029090 | GAG | MPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNSIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLTKGYTKNFKWFKKLKNNLKYVYGRSPKWALHYQESALPDLGNLTENDFN |
Ga0335013_0047760_75_344 | F075668 | N/A | MSYEYSVNDVRCLVMYTLNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSKSNKSYRKINRLNQFYE |
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