NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335013_0047760

Scaffold Ga0335013_0047760


Overview

Basic Information
Taxon OID3300034284 Open in IMG/M
Scaffold IDGa0335013_0047760 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3116
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029090Metagenome / Metatranscriptome189N
F032529Metagenome / Metatranscriptome179N
F036545Metagenome / Metatranscriptome169N
F061798Metagenome / Metatranscriptome131N
F063374Metagenome / Metatranscriptome129Y
F075668Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0335013_0047760_1125_1475F032529N/AMAESRRLIDVTETERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGDSEEQIRRRALAWEKLYEIRQVPVKESTSLKETNPEDTSCEVTSSTDTTFENEAKK
Ga0335013_0047760_1492_1800F061798N/AMAEGRFIDLKSQDIKQIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSEIGNPSEGKTDS
Ga0335013_0047760_2177_2653F036545N/AMSNTTDETLKHFLKNERREKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDSIDITQDWDSDFNLEQFKKLQERMTFFKHLHPNWRLGSREVAEYSNCTCELCYQVRYPMKKDDLEEIKSLTIS
Ga0335013_0047760_2650_2940F063374N/AMSKKFRKIDNFNLSLTIPAYSKIMSTGSERVSKLNLFPQIQESYLGKNRFKSIPQNPGKTLRQFPSVSGNGLSLHTEILIKTVKVIPEESPHILIK
Ga0335013_0047760_560_1069F029090GAGMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNSIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLTKGYTKNFKWFKKLKNNLKYVYGRSPKWALHYQESALPDLGNLTENDFN
Ga0335013_0047760_75_344F075668N/AMSYEYSVNDVRCLVMYTLNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSKSNKSYRKINRLNQFYE

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