Scaffold Ga0335007_0058190

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0058190
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2961
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0058190_1312_1521	F001165	N/A	MTNSNTPRIPDSIDIQRLQAMQLVAKMKESAEKHGIGFIGGFISPDGQKFVMTNMEDDDAMALMPEDLK
Ga0335007_0058190_1695_1982	F007026	N/A	MEQAKKYPAIDWTKNEYHQLKLVVDALNAICAREDKRHQMDEHLDPHMRNIIDEVIGMLEDEIDYDPTPNEPGEPPITAAEMHAAAWKEHQEMHR
Ga0335007_0058190_2039_2266	F091979	AGGA	MLLAGRYAMNNSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPMQNKQAELRLLDQMQRFTPDVRNAVG
Ga0335007_0058190_2346_2630	F019817	N/A	MQATATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKSSWRRYLYLILFAIRE