Scaffold Ga0335007_0041326

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0041326
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3587
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003539	Metagenome / Metatranscriptome	480	Y
F003658	Metagenome	474	Y
F095139	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0041326_1783_1965	F003658	AGAAG	MNDLRGEPTFACICGCKMFKVTVMWDEDTRAVGWYDLAQECIECGTVTTAPTEIDGDDCV
Ga0335007_0041326_2100_2672	F095139	N/A	MRVQGNQIGRQRQQALDFWYDKTDFDWILWVDSDIVLNEEALQMVWNAADPIDRPVVTGTYFISKENEGSLMSPYPAVFNWTDDDYKISYVHPLPVNAVIKVGSAGFGFVLMHRNAVTAMRKVHGTVPYFNETGVGEQFVSEDINFFRMMGKAAVPLYTHTGALVKHMKRFSLDIEYYKMYWNSKSERPN
Ga0335007_0041326_2776_3450	F003539	GAGG	MNYIEEYNPLVQQLAAEYAKRYTMLERDDIGQELWVWFVSHPRKYKEWSALEQKDRDKLIAKSLRNAALKFCEYQKARKIGYDVSDLYYYDVSVVEAFLPSIIGETYEIPTKIQDLNAKFGSGAASDGNNWLSLRSDIASAFYRLSEQKQNILRLRFSVDSPDWTMLSKEMESTPDGARMKVQRALNSLVKHLGGWKPYHEQDNQEVTAVSESTDVEQTEDTDE