Scaffold Ga0335007

Basic Information
Taxon OID	3300034283 Open in IMG/M
Scaffold ID	Ga0335007_0031247 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034283 Open in IMG/M

Scaffold ID

Ga0335007_0031247 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4180
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4180

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003542	Metagenome / Metatranscriptome	480	Y
F017998	Metagenome	237	Y
F018001	Metagenome	237	Y
F024306	Metagenome	206	Y
F066783	Metagenome / Metatranscriptome	126	N
F084228	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0031247_123_464	F018001	AGG	MLTIKNIEYLKGQELNDWKVLDAGQDLRAELGKNIYIITFARLDKGVMQDDRAGVIIDRNINPLLKGYHIKVVYDSWDYEIHTTTWPALTIKGKDAFFGMILYRINEEYYKRK
Ga0335007_0031247_1531_1770	F017998	N/A	MNLERLDLEKYEKLELERNSTIADPLYQQWMSELGVSSSYSDREGIIRANELNRQYEYSHLAGNKSTKFSVSSILSILK
Ga0335007_0031247_2326_2685	F003542	N/A	MSRVNFDYDLFDEKIGWDSQNKKYLIRVYEYLVFEMDNNPAPTWVGIMRKMLGSNPKDVNPSSYYSSVRRCLKEIGVCYFDTTKRCMVKGKNWDRFVSDESWDWFIMRTGSCEYSTIIK
Ga0335007_0031247_3703_3987	F066783	N/A	MNQTTEKLVSIFNQDELAALMTAMAGYINTKNKQKRATGIETVVFNKVVDALLVSNYMNAVEVVPKAGRMGVAEYKMSEAQLEAIYESDVRAHS
Ga0335007_0031247_3999_4178	F024306	N/A	KLKEANEFLKMFKSETVRINSILSEYPVVMGKFPKKYHSEIKRELASAGFSTVSNFLIK
Ga0335007_0031247_466_801	F084228	N/A	MLTIQNVTKLAGRRIFGGWVVRDMNCHPTQNKYMFDMHCMGPLGNTIDRCTVSLNRIGELQRNMFKPDTTAYFLNYNGERTDVCVTKDWILNPENFISQLKYIINEYHNKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335007_0031247

Overview

Ecosystem & Geography

Associated Families

Sequences