Scaffold Ga0335007_0017533

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335007_0017533

Scaffold Ga0335007_0017533

Overview

Basic Information
Taxon OID	3300034283 Open in IMG/M
Scaffold ID	Ga0335007_0017533 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5671
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010237	Metagenome	306	N
F023058	Metagenome	211	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0017533_2_295	F010237	N/A	VGLQVNNDPRNITPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVSTVVQTA
Ga0335007_0017533_3064_4359	F023058	N/A	MAGVAVVGSGLYDLEIDTGYDWNQFILDDDPNGTLDSLYVLDGSDQYASVMDGTIGLTAKRGRANTGDQFPYGTMSFTLNDTYADGVFNPFDTTSPYYDPNNSLPGLAPLRRVRFSRYDSLGVKEYLWVGYIVNFDYTFTLGGLDTVSVTCADFSYQLGQTFLAEWNVTEQLSSDRFDDLLDRPEVDYQGTRSIETGVATLGGAAAYTVANGTSVAGYANKIMDAEQGRIFVDREGTITFQKRIGQVLGVPVAEFHDTNPPTKIGYSAIDIAFQADTVVNRASIQHAGATSPEVAEDLTSQAAYLIQTKSITDSLVHNDAAALTLAEYLLNANPEARFNSIGTEFPGTPALDQDLLATLDIGDVINVQKSITTSAGPTQFAQNLTVEGLEHRLTLSAGHAVTYFTAPTTIVYELILDDAVYGTLDEDNVLG

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