Scaffold Ga0335007_0000348

Overview

Basic Information

• Taxon OID: 3300034283
• Scaffold ID: Ga0335007_0000348
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34909
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (86.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002689	Metagenome / Metatranscriptome	536	Y
F016804	Metagenome	244	Y
F021067	Metagenome / Metatranscriptome	220	Y
F088805	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335007_0000348_11308_11487	F002689	GGAG	MTTIDATEARLSTHEEVCAIRYEQINARLKRIEGILMKTAGLMIVSMAGTIFSAVWILK
Ga0335007_0000348_20450_20674	F016804	GGAG	MSKLKTATIPDHHKVQAKIILNEAIDEQPDTVIVLCFWKDKGQFKIKSSTASDRLMVIGALEEAKSKFILDGYA
Ga0335007_0000348_20671_20883	F088805	GGA	MSLSHHQVFMLKHFAMGWKFKLDNKVNGSWTTYWSLRRRGLVDAGSVVTALGRKVLAKQLQLQAKREAGK
Ga0335007_0000348_30702_30965	F021067	GAGG	MALKISIPTSNVGVPFTDAYARITNIFGNKDQVQYQVSVSANADARHANAQEVAQHAFYCPTPQGNLMDGLYADLKQQAGFEDAEDC