Scaffold Ga0370492_0162176

Overview

Basic Information

• Taxon OID: 3300034282
• Scaffold ID: Ga0370492_0162176
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 913
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 63.8785
  • Long. (^o): -149.2588
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010114	Metagenome / Metatranscriptome	308	Y
F039250	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370492_0162176_212_385	F010114	GAGG	MIIELNNDETRLLHTVLLEQAQEHLSYADTSEVAERLYRLATRFERSVREVPNMTTT
Ga0370492_0162176_385_834	F039250	GGAG	MADRAVVEACEITLQGNSPFRDWLFEWAKAATIASAISHATGAIRIREDAYKDQRCLHVEHLSQGDVEERAASLDLILGTDAQTLIAELDPLCRAVLVLRLAIRSSLQDCALRLNVSRAAVLAANCHALTWLQKRQVKPVEENHILARI