Scaffold Ga0370492_0001051

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370492_0001051

Scaffold Ga0370492_0001051

Overview

Basic Information
Taxon OID	3300034282 Open in IMG/M
Scaffold ID	Ga0370492_0001051 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10394
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	63.8785	Long. (^o)	-149.2588	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F100202	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370492_0001051_5771_6265	F100202	AGG	MSFRLSLIGVFGCLLVCLIGFQLKAADAPTAATANSTTIYFSSAPWDGAAYDLEIPLQPVGDAAEPYIRISIWGYPEFPDPKTIHFTGKEDSGGGPSKGEGRALFQPNLNKSMPENLEGTISFKILKKDTPVSGSYELATLDGKRVFKGSFQAAWGNKLQTAIR

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