Scaffold Ga0370481_0000002

Overview

Basic Information

• Taxon OID: 3300034281
• Scaffold ID: Ga0370481_0000002
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 443116
• Total Scaffold Genes: 354
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 72 (20.34%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9141
  • Long. (^o): -147.8344
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007838	Metagenome / Metatranscriptome	344	Y
F014212	Metagenome	265	Y
F028047	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370481_0000002_108444_108965	F028047	N/A	MESDMKEVIFRNDWHQLGEKQIVDLFNEHFTCVTIQPGESIIKRLKMKEVCTLEILEDRSSSTVYRIRQTDEVFQIYQPDGKLFSYTTEDYYLQKPIDDLVKEYSKKDPIFKIEKVSDLKDIVHHLKSPKFRALFVDGTFDKVEWIDQPPEDISEIPKLLRKMGAFYTSYVKK
Ga0370481_0000002_139588_140202	F007838	N/A	MRTLFTLLLFLMTCEIYGQVPAGITVVVKNPSWQAEDAAKESLEKADRIRQITTLTEQVNTQKESLQAIRDATEKLRKINRKVANYHNLELAIAQVSDSYTRVLNSLKTISDHNCFKPSEYHMISESMMGLLNQTSYAISTLTVVLTDNLSEMTDGERLLNMNQALSELKDNLGVINSAIIEVEILDNQRMQLRTLSYMKSIFK
Ga0370481_0000002_143443_143949	F014212	N/A	MKIKLFIILLFISASASAQLIHVEGSKSLSINGAYVKNGFNASSRITFYKSGNLAYRVSLDYERVSFDLSKASIVFANPELMYTIYTLGDSFFFNVNGGILTGSEFISNSILDKKKSQFFIGENLGLCAEYFISNKIMLNLDLDQRFFQMSKVGKVSFIIGLGINYNF