NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334997_0000673

Scaffold Ga0334997_0000673


Overview

Basic Information
Taxon OID3300034280 Open in IMG/M
Scaffold IDGa0334997_0000673 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24445
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.04%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046328Metagenome / Metatranscriptome151N
F101005Metagenome / Metatranscriptome102N
F102856Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334997_0000673_15054_15230F102856N/AMKIEFNGQELYINFVSEDSNYVIVSKDKEGTLGKFKLNTSDLVGVDISKLKKVKRGTR
Ga0334997_0000673_1865_2557F046328N/AMGLSTKDLVNENNGGGMAKTIAPGNHTLRINSVVLEDFQFIDGAKHLILNVETEPIDGFEGFLIDKDDESKGKYKGQIGRVKASQYAYADGQTKSGIKIQRDRSLMMFLANLSKATGIMKWFEEQDNKFNTIEDFVKNFSDNAPIKDKYLDFCIAGKEYENKSGYTAYDMWLPKAENNKYAYGNEGSDRILKYDEAKYLKKLEVKPVDNFGDDDDDFPTPGRTSSDFSLD
Ga0334997_0000673_553_1128F101005N/AMYNRKDKEKELMEHHSKFLEKLTGGYQFTAKTAFYSKGKFGRQIQFFENELNKGTDIYVELVDIERDARGAETNMVPMFWERPLFKYRYNPYFKEEYEVKTSTNSRGEEYSAYVVPTSELVCVNKGSEEIPYNSYETQRTEEPKEQKKLSVFPDFEEEFVPKLKTQETDEDVSSILLQIAEGFQKLAQKLK

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