Scaffold Ga0334997_0000673

Overview

Basic Information

• Taxon OID: 3300034280
• Scaffold ID: Ga0334997_0000673
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME10Aug2009-rr0048
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24445
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046328	Metagenome / Metatranscriptome	151	N
F101005	Metagenome / Metatranscriptome	102	N
F102856	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334997_0000673_15054_15230	F102856	N/A	MKIEFNGQELYINFVSEDSNYVIVSKDKEGTLGKFKLNTSDLVGVDISKLKKVKRGTR
Ga0334997_0000673_1865_2557	F046328	N/A	MGLSTKDLVNENNGGGMAKTIAPGNHTLRINSVVLEDFQFIDGAKHLILNVETEPIDGFEGFLIDKDDESKGKYKGQIGRVKASQYAYADGQTKSGIKIQRDRSLMMFLANLSKATGIMKWFEEQDNKFNTIEDFVKNFSDNAPIKDKYLDFCIAGKEYENKSGYTAYDMWLPKAENNKYAYGNEGSDRILKYDEAKYLKKLEVKPVDNFGDDDDDFPTPGRTSSDFSLD
Ga0334997_0000673_553_1128	F101005	N/A	MYNRKDKEKELMEHHSKFLEKLTGGYQFTAKTAFYSKGKFGRQIQFFENELNKGTDIYVELVDIERDARGAETNMVPMFWERPLFKYRYNPYFKEEYEVKTSTNSRGEEYSAYVVPTSELVCVNKGSEEIPYNSYETQRTEEPKEQKKLSVFPDFEEEFVPKLKTQETDEDVSSILLQIAEGFQKLAQKLK