NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0164726

Scaffold Ga0335049_0164726


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0164726 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1578
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009073Metagenome / Metatranscriptome323Y
F017827Metagenome / Metatranscriptome238Y
F030087Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0164726_1087_1422F017827N/AMSYASVNYESFGNIKNIPANRARVIKAGTPVVTYTNMFGKTFNLPYRTKKQYAEIVQFIKLFRNEDITIKRILSDYSVSYGRYVNESKLRKEIKAEFGFTKSAIDLILSIH
Ga0335049_0164726_513_746F030087N/AMYGLFDGYLYDELIQYADEVTMSKELYRRILKVFNTVCKYPKYARYVEPAESYNEPEPIEYVEGMGVADGKLYLATI
Ga0335049_0164726_867_1067F009073N/AMKNYQIILTSILSFSVAYFILNGTAAEYVPFAGPLNELGCAVIALTMGVLSTYAIDWKSFIQFLNK
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