NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0114436

Scaffold Ga0335049_0114436


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0114436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1956
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006051Metagenome / Metatranscriptome382Y
F015168Metagenome / Metatranscriptome257N

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0114436_1785_1955F006051GAGMGRIVDVIRCNIVEKYMASYMRERNVDALLILRNENKWAMTGKFFLFSRFDNFLDIF
Ga0335049_0114436_3_1268F015168AGGAMARQIIVGNQGRNHQVAAYQGSFRGRERIAYQDLPSIHELEQVLEQLTTTITLRAEDIPQRLITLPPLTTDLSEIDVYTEMARLDLQYDDLKTDKPRTASLNRICKALCIGRYIALGNQPPLQYKSWALVCPMNFENPDMPHGEQSHLAVDNSTKFIIKSMKHRDTIKDASGKIGHMIIPELCHLNNCMCASDCIANNQESLHFLRICAPKSLRQQYAEADHLPDARNAVSIGKKYGNTHTVYYSPVSVCGTVTPQMICRQPITELSRKSPVFRTAQYSHIDMYDDLHLIRAISACLSRPEIRQYTKNFTESCKPLETTDETENLYRFPRINRQKQNTDILSLNPSYESLDQALANEPLTEPFMGPQSCPYCPTILQVAEPKDYLLHLFDHHAILTEAYFTCPACIAICIYNKHTYPAHYTD
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