Basic Information | |
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Taxon OID | 3300034272 Open in IMG/M |
Scaffold ID | Ga0335049_0002247 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 14039 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (82.93%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022399 | Metagenome | 214 | Y |
F022870 | Metagenome | 212 | Y |
F023329 | Metagenome / Metatranscriptome | 210 | N |
F024101 | Metagenome | 207 | Y |
F042303 | Metagenome | 158 | Y |
F063633 | Metagenome | 129 | Y |
F084152 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335049_0002247_10323_10586 | F022399 | GGTGG | MDKKYQSIYIKNGLEVFVNPEDFWADYKVRLNGYHAKSFYGETAWMDVTRFVHDQAMEFWDFDVDGIHRQWKTDLLEELERRFSDAE |
Ga0335049_0002247_11208_11459 | F023329 | GAG | MVDEEKEIAQLEAFFKYNISNDEILSGRLKILMADLSWKMELPTWTKEELDVMSARMDALVELSNLLYDIQWHRLNWERKQNA |
Ga0335049_0002247_12352_12570 | F084152 | AGGAG | MEEYKVVDRILPNYLEQGDLIKVKGEVFQILNINDTAEGWDLIVLDNYEETKIIQVPEDKLVSVVMQDNLEL |
Ga0335049_0002247_2725_2946 | F022870 | N/A | MTLLLVGVWNKYDKKGCVDKYTADILATQFLYGEGIDVDRAMTAIYNNGGWVEDELTPDVEVIFPCLKNEDFI |
Ga0335049_0002247_3077_3271 | F042303 | GGGGG | MINIYSKTYYRIENTKYFLSNAIDTIKYHVSNVVDSVRYAHDETWLAIALVTTWVFCAYVASVN |
Ga0335049_0002247_5321_5590 | F024101 | GGAGG | MPKEKPIHKMVEEVFDKDVNTDLLDELVEERNFIVNTMKKFVEHDEIWVQLVDNIEARKQFLINLQMLFLNEIENQTLIELATTKWGND |
Ga0335049_0002247_6686_6841 | F063633 | N/A | MSHTYKDKKIQHVQGLRRSNASGTHKNKVKDRQKRISSAKIWKDYLKDENE |
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