NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335049_0002247

Scaffold Ga0335049_0002247


Overview

Basic Information
Taxon OID3300034272 Open in IMG/M
Scaffold IDGa0335049_0002247 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14039
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (82.93%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022399Metagenome214Y
F022870Metagenome212Y
F023329Metagenome / Metatranscriptome210N
F024101Metagenome207Y
F042303Metagenome158Y
F063633Metagenome129Y
F084152Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335049_0002247_10323_10586F022399GGTGGMDKKYQSIYIKNGLEVFVNPEDFWADYKVRLNGYHAKSFYGETAWMDVTRFVHDQAMEFWDFDVDGIHRQWKTDLLEELERRFSDAE
Ga0335049_0002247_11208_11459F023329GAGMVDEEKEIAQLEAFFKYNISNDEILSGRLKILMADLSWKMELPTWTKEELDVMSARMDALVELSNLLYDIQWHRLNWERKQNA
Ga0335049_0002247_12352_12570F084152AGGAGMEEYKVVDRILPNYLEQGDLIKVKGEVFQILNINDTAEGWDLIVLDNYEETKIIQVPEDKLVSVVMQDNLEL
Ga0335049_0002247_2725_2946F022870N/AMTLLLVGVWNKYDKKGCVDKYTADILATQFLYGEGIDVDRAMTAIYNNGGWVEDELTPDVEVIFPCLKNEDFI
Ga0335049_0002247_3077_3271F042303GGGGGMINIYSKTYYRIENTKYFLSNAIDTIKYHVSNVVDSVRYAHDETWLAIALVTTWVFCAYVASVN
Ga0335049_0002247_5321_5590F024101GGAGGMPKEKPIHKMVEEVFDKDVNTDLLDELVEERNFIVNTMKKFVEHDEIWVQLVDNIEARKQFLINLQMLFLNEIENQTLIELATTKWGND
Ga0335049_0002247_6686_6841F063633N/AMSHTYKDKKIQHVQGLRRSNASGTHKNKVKDRQKRISSAKIWKDYLKDENE

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