Scaffold Ga0335049_0000001

Overview

Basic Information

• Taxon OID: 3300034272
• Scaffold ID: Ga0335049_0000001
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2017-rr0156
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 256912
• Total Scaffold Genes: 357
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (15.97%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012213	Metagenome / Metatranscriptome	282	Y
F021291	Metagenome	219	Y
F068755	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335049_0000001_107195_107410	F021291	N/A	MNNELSNRHKNALKNTFPDLEIQKEVEPQTQLEELNDYLRLLADMDNIGIRRKLFLLEGYMNKVISQLKNK
Ga0335049_0000001_108594_108848	F012213	GAG	MIHQIKTFDKKILVELKIIDHGTEFYTSNELSVLKQKIMDANREHGLQFENDFSSLNGIKEEKINDKFTEISERWGLNYEITRY
Ga0335049_0000001_122196_122510	F068755	GGA	MEKTKYPIGGFAPGNYMCECVTCKHDFLGDKLAVQCETCAIEMVKTKIEVAENGGIEIVHDYLPGFIEQFGDGPLGELDPNEWTALDFLEWLQINNYKIIKDVR