NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372943_0782495

Scaffold Ga0372943_0782495


Overview

Basic Information
Taxon OID3300034268 Open in IMG/M
Scaffold IDGa0372943_0782495 Open in IMG/M
Source Dataset NameForest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)632
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Eldorado National Forest, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.7833Long. (o)-120.2976Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001776Metagenome / Metatranscriptome636Y
F017190Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0372943_0782495_205_423F001776AGTAGMRYREEKPTDLARARDAVAAWRHQNPAGTAEELVAVVGRQFHRDYAVVLFAIDRHRAHQVTGLATETARTAR
Ga0372943_0782495_420_632F017190GAGGMSDRHAGLTPRLLGLVPDELDQVPRLRDFRAAHPDVIIGPGGFGTWQAGIPEPNGETVASRYTLRELLDRL
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