NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370495_0071797

Scaffold Ga0370495_0071797


Overview

Basic Information
Taxon OID3300034257 Open in IMG/M
Scaffold IDGa0370495_0071797 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1056
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.835Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011177Metagenome / Metatranscriptome294Y
F033108Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0370495_0071797_413_613F033108N/AMSGPEDDPVPLGLVLGLEDAFRVLEAIEDALLELIRQEAAPGLRDELATVIRLIHDSLGIDEGGPQ
Ga0370495_0071797_610_780F011177AGGAGGMSDEVLRPAEAAERLGVATRVIVKAMYERRVPRVRLSDGTLGIPAEALADFVAQTV

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