Scaffold Ga0335065_0000336

Overview

Basic Information

• Taxon OID: 3300034200
• Scaffold ID: Ga0335065_0000336
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33261
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.18%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F008081	Metagenome / Metatranscriptome	339	Y
F024318	Metagenome	206	Y
F029443	Metagenome / Metatranscriptome	188	Y
F034898	Metagenome / Metatranscriptome	173	Y
F065775	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335065_0000336_19952_20173	F065775	N/A	MSKTIKSKTMSNFQLNFNSPKKVITITLDHEEGIFQLAYLFKKLLDDAGIENKLEEKEVEAVEATEVGNEKLD
Ga0335065_0000336_2_439	F029443	N/A	MTLVDLVKKLKAIQEAHPMIRTFGEGDIYDYVDNGGEIQYPVLWTVVKPSVYSGTTMRYDLVLLFADLLTEDKSNRLQIQSDQMLVALDFLAKLKLDNDYSFNTAPNAALEFFQERFDDFTAGVSIAVQVIAPMPLDLCSIPTEA
Ga0335065_0000336_21549_21791	F005529	N/A	MLPKSKLDYSLEIRYRLSNGEWSKWMNKGKGSFQSIEIVQRQIRTLAAEHYGRQKEIRFEWNGWLCDYSGQPIGEVISLK
Ga0335065_0000336_23454_24083	F008073	N/A	MKGIILKHLQKMEFVCGLKQFKEYSQEDAKELLDCLNKLFTSYGWMNESRVDYILHAGMRGQYGDFYHVNEKNVSGWINQYYAHHQSQIVQEVQAMNNKDQEPTNEEIEYWIEVGKQIFRDNYQYAKDHGFCKDLAEWGANWFNKFQEKGILKPWMYQVEDIENDVRRELRLTTRYIDEVIVGAKSKNKIWKLFILESIKENRNLDQLI
Ga0335065_0000336_25095_25460	F034898	N/A	MTREEIITELNHRSTQKYLVYLALQEIMLDYYEDVSMLKFFDLDLQTKHKNMINALKRKSTQAFIYLEGYDNGEATIKQFHEFVTLFEKLHTAIDEGGSIFHDCLNAVEEILDRHEKKTV
Ga0335065_0000336_26459_26605	F024318	GGA	MKPYLYLGKFIQRPGDLAPKGVKSTYQTEKLPFNETFERIWQLASMKP
Ga0335065_0000336_28567_28818	F008081	N/A	MEESEILNPFGYGKASKVMDENRKPAEWWIDYIQFNEVVAENEFYVLFADGFLIKKGRSKFRSSQYLKGDRFRSFSQYHEAGI
Ga0335065_0000336_29721_30257	F001775	N/A	MIDQRIQIAILAFIAGVILAFIVFPRPEQETVYKFETKVETDTIYSHVVDTIYVPKTKIKTEVLRDTILKEYEPKISLFKASFPSDYGSTYVSGEVLGEVLKMTATNDFKIPVVTNTITNTETKTIIQKPKGIYLGAGVNSLIQPMAKVSYLDNKYLFEYGYQPVTKVHSLGISKKLF