Scaffold Ga0370501_0003466

Overview

Basic Information

• Taxon OID: 3300034195
• Scaffold ID: Ga0370501_0003466
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3970
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9096
  • Long. (^o): -147.9451
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057831	Metagenome	135	Y
F081131	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370501_0003466_142_387	F057831	GGAG	MMPGPQGSSIERAVAAETLAAALSPLSVRSIQRRLERILLDDRELLISLQCQLEQIRRELRLLNDDRIVRAIDNVDRPVSN
Ga0370501_0003466_3422_3757	F081131	N/A	MDSSHQAATISALEAATDALLVALSKRPDPDMDAASEALQARQAALRFLVQTDPKTRPPDLNARLRRILDCDREAAVQLRADMDAIRDRMAGTRDLMQTYSTRARSMGSAK