NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364931_0253648

Scaffold Ga0364931_0253648


Overview

Basic Information
Taxon OID3300034176 Open in IMG/M
Scaffold IDGa0364931_0253648 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 21_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017105Metagenome / Metatranscriptome242Y
F029804Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0364931_0253648_350_568F017105N/AMRPLLTLAALGGFAFGLRHFFIFLNEKNKNRLQEKKLEVWEGEGGAVPVAATRTAAQVRPQKPSSASSSGVN
Ga0364931_0253648_61_222F029804N/AMQFARVYYSPKDSEWRRKNGERVPEECVELDPAKLRRASSNGTIYRYEGKLQP
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