NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334939_0234624

Scaffold Ga0334939_0234624


Overview

Basic Information
Taxon OID3300034175 Open in IMG/M
Scaffold IDGa0334939_0234624 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 35SMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093899Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334939_0234624_95_388F093899N/AMAHIIEVVRDTASEARSFLDALFYSDSVSAIGHRPDGELIRAVAVNWDAGEESDLDERISQMVSDAIEADDDLDEIAAYCQIFPETVLYQPELGDIE

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