Scaffold Ga0334925_000017

Overview

Basic Information

• Taxon OID: 3300034173
• Scaffold ID: Ga0334925_000017
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 21HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151613
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (64.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011178	Metagenome / Metatranscriptome	294	Y
F021852	Metagenome / Metatranscriptome	217	Y
F041974	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334925_000017_104574_104804	F011178	N/A	MTAALEMQVTIVDRGELRDRLRDRLDRASRLLCAEHHRPIDAVIIHACENGWFDARWTTCCEALERQAAAIVKERC
Ga0334925_000017_115414_115644	F011178	N/A	MTAALEMQVTIVDRGELRDRLRDRLDRASRLLCAEHHRPIDAVIIHARENGWFDARWTTCCEALERQAAAIVKERC
Ga0334925_000017_142881_143096	F041974	N/A	MNSLFFALIGVFVAMLVLIIVWSRMRRQVGGGWGPTRFSDGSMTTTPTGYPEEMHGGGKTISPTDNHSADL
Ga0334925_000017_5717_5950	F021852	N/A	MTDFEDRIRRMAREAMGELGRDGSEIADVIEPPGADYCVISFSDPSHKPIEISKPLGAGESQELDEIRRALQYRFGT