Scaffold Ga0334913_104543

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334913_104543

Scaffold Ga0334913_104543

Overview

Basic Information
Taxon OID	3300034172 Open in IMG/M
Scaffold ID	Ga0334913_104543 Open in IMG/M
Source Dataset Name	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	600
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.7856	Long. (^o)	-115.66	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011905	Metagenome / Metatranscriptome	286	Y
F104354	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334913_104543_1_360	F104354	N/A	MRTAPRIGAGLVGWRRLAVVAALANTAVLLTYGLARGDREALAFAVIMLVGLGLLRLGNGPLGLVVLAALFVNIEVWMFPAANGNATYRVGLIDLLVPGSLVAFSLAGFVGAVAGLVHLH
Ga0334913_104543_371_571	F011905	N/A	MKIRRRLAQLGLIMVALPVVGWGLEQLAKRAEERRPGSGRWLRQGSDLAHGLGRGPLESRLRGPRP

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