Scaffold Ga0334913_001371

Overview

Basic Information

• Taxon OID: 3300034172
• Scaffold ID: Ga0334913_001371
• Source Dataset Name: Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9343
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.7856
  • Long. (^o): -115.66

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010171	Metagenome / Metatranscriptome	307	Y
F060689	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334913_001371_4789_5079	F060689	GGAGG	MPADSSMSPALLQDLTMAILDGPADEGRRIIATIRSYLDTWEVFLQDRQQLRDHLASAHHAGSSCLEADPASLNRQHWLAHGSDLTSFLDAHPVQA
Ga0334913_001371_5150_5428	F010171	GGGGG	MLPDQPVATVDPEVERLARVMVDGLIERLAAEPAVPATSLLDNLAEQLQQAANLRRLNVRRRMPGSASTPATPRRAAPRAASEGQLAPPHPS