NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334913_000004

Scaffold Ga0334913_000004


Overview

Basic Information
Taxon OID3300034172 Open in IMG/M
Scaffold IDGa0334913_000004 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538537
Total Scaffold Genes528 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)338 (64.02%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026601Metagenome / Metatranscriptome197Y
F066284Metagenome / Metatranscriptome127Y
F091830Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334913_000004_10075_10365F066284N/AMRADYDSTANAISIAITDAARADKSDEVHSRAIVALADDKPVEVQLLYPDMGISEPLAAVVDRYELDLEALTAAAQSALAAPDRVVVLEVPARTAA
Ga0334913_000004_30194_30460F091830AGGGGGMNPTDSPTSLFAIGALPLAALAGGSWIMLGVMIFMFFGVVLGYYTRTGSGINPRPYGKVYGGAPGAIGPADVSGKDHRERVSWSRGTR
Ga0334913_000004_509270_509659F026601AGGAGMDKIRGAQDQAQQAMAGAGQGQSGMPAGMGGMDMGAQAAYAQMAQKLAQSGVEAPGVIHSIRPTGETDMGGGQRTEFDVSIRPADGGDPFQTTISQSMLPAQMEDLSEGKSITVKYDPDSPTSALIYGW
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