Scaffold Ga0370487_0000553

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370487_0000553

Scaffold Ga0370487_0000553

Overview

Basic Information
Taxon OID	3300034170 Open in IMG/M
Scaffold ID	Ga0370487_0000553 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8916
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9141	Long. (^o)	-147.8344	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056275	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370487_0000553_6088_6354	F056275	AGGAG	MDWHCINFTRGGSHEAEAADLVLALEDAFDSAGEPAAAEVFLSRGAVGDYAFYLSPEAASMAPGVLQRFHAVMCDPPLDLHRCTPMRL

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