Scaffold Ga0370480_0004237

Overview

Basic Information

• Taxon OID: 3300034169
• Scaffold ID: Ga0370480_0004237
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5306
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9142
  • Long. (^o): -147.835
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033858	Metagenome / Metatranscriptome	176	N
F058258	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0370480_0004237_3237_3548	F033858	AGG	MSEADSVKKIESLRKIRLSATMLEVGFKSENLSEIIQCQIELEELAARLQAEQGDIVTALQCEQAKDSLDAFVALVDQAMAKATLNEGIPSGVSKPKPTTLGK
Ga0370480_0004237_3645_4229	F058258	N/A	MAGCASLPPTIDQGEYQNYRYGFIVRLPDDGWLMMKTVPESFAAYLVPETPERVLVLLHNPQTRGLIALRGGTLYLSYENALTLHERLTELIEPVLDLDWIRLVREVPESRGSYRLGHWDASGLQWQERSESRPLAGIKHTSMGYYYPLNGETCYVTFYLFSEPDTFDDNVKALHRMAGAFSSGEVFTSRAYGW