Scaffold Ga0335017_0071058

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0071058
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2055
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004816	Metagenome / Metatranscriptome	422	Y
F010898	Metagenome	297	Y
F075700	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0071058_1357_2055	F010898	N/A	MDKINIYINSKNRKENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNTWFNCIDGFNNMFQIIIYDSNDNITSIFDYRLPDGNPNVNDVRTNLNTLLLNKVVISYDRIKNKFIYKRTLPITTTNFKMYLKIINSEDFLGFYKSDRDKLILLPYFNNIYCNNIVNISGDEAIIIKISGDCILAGNTVDNFGDIDYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRLAN
Ga0335017_0071058_2_301	F075700	N/A	MISEQSLDGWDNKPVKFSNVKYPQTKDNNAPQNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKIYYEDQEIPQRIILICSTAHSDSNRVFKSLKNLNWDSR
Ga0335017_0071058_612_1331	F004816	N/A	MKFIKYKQVARITLYGFDDLLRSDPNSVFTESLNSRYFIGNLNAGAQVGNNAKRMRFQIKGLDNVKLSEHARFCMESINVPILYDNADDRKSLSQTIVRMSNLSSINCFDSHGNGQTDPVIFTAPTSTLQQRVGTATNNVIYKNTETSPVFYNPYPEMLYNFPVSSNFLNNRYFDFTFIMQFMLGDFINLTDDQQYFDMFHISFIIYDLDEQELLLTSTQDVDFKKIGETLPRKINNVR