Scaffold Ga0335017_0048336

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0048336
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2511
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013526	Metagenome / Metatranscriptome	270	Y
F021757	Metagenome	217	Y
F048982	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0048336_1297_1470	F048982	AGGAG	MSLELQDTLSICRQIRNNDHDSGTHYLLGYLWANTPDKEKERIYKLFKADLDEIGEK
Ga0335017_0048336_2281_2439	F013526	AGGAG	MTKKNVLISFVTDADTDLDAIWSLNRIMQKLSDNELEKFNAFEVLDVEEILL
Ga0335017_0048336_3_143	F021757	AGG	MMTRKDYVSVAEILSSYRELIGDEFTFQDLVDDFGSLFEADNPNFKF