Scaffold Ga0335017_0010671

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0010671
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5113
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002935	Metagenome	519	Y
F025743	Metagenome	200	Y
F093851	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0010671_3_233	F025743	N/A	METMKFVYADLLTPSQLMEGDLINIDDEIVEVVSVVDDATGDNYIITHRNDYGEEEETLCTYEDMFKLYVFIDEDE
Ga0335017_0010671_3611_4036	F002935	AGGA	MRERSKGYIGQIVDGKKLATIANSIYDLQYSGGASNCTVDNLLLVTLEEKNVFGDNKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVETVKECLTDQTEDISDYIRTFGDRLDNNCSLWQSKMSDPSVMIEA
Ga0335017_0010671_4194_4352	F093851	N/A	MLGYIRTDVDDMVYALDSVLTTINSDDDPWLYNNTWRAKELLQGLQVEGYFD