Scaffold Ga0335017_0003801

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0003801
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7906
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.53%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023350	Metagenome / Metatranscriptome	210	N
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0003801_2571_3071	F023350	N/A	LTLDKYIEGHYKKFKELAKNIARGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVHRPTSPFYRQTIAWNRNRREFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRKK
Ga0335017_0003801_42_332	F045753	N/A	MYCPKITYCFSDDDIRTLNERIKAIANNYNDDQTGWFEVNEEQHLVFIDDLDNMYTINLRGRFFRNDDPEFDLDFVTLEKDGVSFSFDVNIFDDHI
Ga0335017_0003801_970_1080	F041777	N/A	MKKTLIYIAILFAGMLIAGTIDEQTRQLEQQPNTTK