NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0003801

Scaffold Ga0335017_0003801


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0003801 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7906
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023350Metagenome / Metatranscriptome210N
F041777Metagenome159Y
F045753Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0003801_2571_3071F023350N/ALTLDKYIEGHYKKFKELAKNIARGEDYYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLAVHRPTSPFYRQTIAWNRNRREFKEYAHEVDKTWLGARMTNEQLDILISRLTEFERLIFQEYIFEGFTYREFSKQTGIPTVFLYRTIDSIKTKIRANVIRKK
Ga0335017_0003801_42_332F045753N/AMYCPKITYCFSDDDIRTLNERIKAIANNYNDDQTGWFEVNEEQHLVFIDDLDNMYTINLRGRFFRNDDPEFDLDFVTLEKDGVSFSFDVNIFDDHI
Ga0335017_0003801_970_1080F041777N/AMKKTLIYIAILFAGMLIAGTIDEQTRQLEQQPNTTK

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