Scaffold Ga0335017_0000733

Overview

Basic Information

• Taxon OID: 3300034167
• Scaffold ID: Ga0335017_0000733
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16221
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030415	Metagenome / Metatranscriptome	185	Y
F075742	Metagenome	118	Y
F085263	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335017_0000733_13021_13278	F075742	N/A	MKLKFGDSVYKTDLKNSIYQQSGANFGLTVNKGMLINNRPDGQTGIQQAASAKKVIRHMEKVQTMAEAVFLGNLRSEMMEGPNMD
Ga0335017_0000733_7970_8152	F085263	N/A	MANGLKKSKDDIIQDNVQISEEVLSEIPKAKGPKDAYAIPELKKKDIVITPGHTRRDFRN
Ga0335017_0000733_8168_8344	F030415	N/A	MKSTPNLPASSRMQMPSGGGPSIKGALKAKAFGMAGGVPSKGPIKGAGKGAKKKMMNK