NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335017_0000164

Scaffold Ga0335017_0000164


Overview

Basic Information
Taxon OID3300034167 Open in IMG/M
Scaffold IDGa0335017_0000164 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Apr2015-rr0082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34464
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (17.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F028175Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0335017_0000164_11836_13071F028175N/AMAITIDDQPYQYTPIGQRLMIVCSSTNVANAGFRFVFDFGAFQVNVQPNASNKGMLDLAPIFREQLQHDAGAANEGINDEYKSVANISCSIKEGWLIDGVFTGTNTGSASIDDVYAFLAEYQVSDGYKPNPNARYALSNTSKYLLSERTTDTHKWSEAPARGLSNDWVYIPTRLADFGQLYSISNNGLLVDNDATDLFVSTYDNSNTLIAQTNFTLFTDTNSVCRLGANPQNLINEGLDFTNVKYYTIQAGAPIVLPIYTPYSRVYCFYIVADDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGSYNTASFAFNTWDRGTTDRYVNTTKGLQINSDWISVGEFELLQTLCRSNDVFIIGDDATMTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0335017_0000164_26924_27661F012871GGAMLRSASSTTLSITQRVDRAERESAFVADYDLPTFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVVFIGDVLTHYKPHRDKANLQIQREIAESKEEESKQLKEKEMAVNDDSWRRMLAEDLQNYKKGKYTVIEIRAVSLMRWLEESKIINADTFTEEEYRLCKANAKKNIYFEQQLVQSMVERMSDRKRMLLKESIRFEGMRELYKLYLSKQ
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