Scaffold Ga0335016

Basic Information
Taxon OID	3300034166 Open in IMG/M
Scaffold ID	Ga0335016_0002058 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034166 Open in IMG/M

Scaffold ID

Ga0335016_0002058 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18606
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (25.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

18606

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (25.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F012040	Metagenome / Metatranscriptome	284	N
F012111	Metagenome	283	N
F082111	Metagenome	113	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335016_0002058_17089_18606	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNANFRQGFVSCRPGFVQKDYDLCVSITADNDQITADQTNVTADGWSEECYGPQSLTGTFQCALPYIADDGRTFILMLISGKVWLYNCLQNTAQNLSVSPSLENPSNLLDGWMVQAENFVVIQDGFSRPLIFNGTNLRRSSDDEIKTGKVMAYVNGRIWYALPDGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLSYPIQAISLLTSGALGSRSAITINGDVFYRAVDGVRSFIIARRSFTDWGNTPISSEILNVIENDQTNLLWASSAVVFDNRLLMTCQPRYNAEGVIHKALAVLDFDLITSMRKKFPPAWSGIWTGLNLLQIVKTENAYGDQCFCIARGSDDSIQLWEVTKGDKFDNNIPDGKKEIEWMVQTRAYNFDVPFGLKRLDSGDLFVDSLEGDVSFNVTYRPDQYPG
Ga0335016_0002058_3229_4374	F082111	N/A	MEEPLNSPVVSNNQTPEFGSSFIDAFKAIGADNTAPADKAATPAPQKTDNTPPKLSKSEMDIERMFGSKKAAAEPAAPAPDDADIPETIKSTKAADAFRKIKEEKAQLAKQIEELKAGKIPNANSEAQLKTLQEERDALSERVRLLDIERHPDFIKKYEGKITGVFDSVKNLVGTDGERLVSLLKSPDSDYRNSQIDDIVEGLSPSKKAKLGALIVKYDEINGERSSELNEAKADYDAVISKYKQDNEEGTKAALESANKTWQKVSTDARSLEIFEPRENDEEWNTELNGRLSLAQQIFNGENSEEDLAKAALWAAAAPKYRELLYAQVEVNKRLQAELTKYRGSEPGVTSKATSGGYRPANANTAKSEDFVASVMKSLGR
Ga0335016_0002058_4381_4713	F012040	N/A	MNWLRGLTKNPSKQAKQDLLNLPEVNISAWQDEGQQAELAAIMRNPIIRMAIRIVSESIPVPMPSHGSKESDIIFAAGVTAGYAHCLENLRKLAVFETAKEPEATFDKQY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335016_0002058

Overview

Ecosystem & Geography

Associated Families

Sequences