NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364940_0108818

Scaffold Ga0364940_0108818


Overview

Basic Information
Taxon OID3300034164 Open in IMG/M
Scaffold IDGa0364940_0108818 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 14_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)784
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007431Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0364940_0108818_5_658F007431N/AVTSLGDTVSLAAEFCTRRRVGRSRRGLPLWEEDTYRRLVRIAWSDTARIYPFGTGRRAAGAPARTAWVELILEREFAGGEARAAEAFDIGDSTRDFRMEAVVRPRRARVTLNLVRGDTVSAPRPMDLLPEEPPRVVQLVLRGRPTTLVVSLTRPAPARSARDRALALDADVVCLRVAPPDTPEPLGQICGRLNNIARRLPLPTGDTLSATFAWPGPR
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