Scaffold Ga0370507_0001316

Overview

Basic Information

• Taxon OID: 3300034158
• Scaffold ID: Ga0370507_0001316
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_06D_18
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8843
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9144
  • Long. (^o): -147.8354
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034230	Metagenome / Metatranscriptome	175	Y
F045836	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370507_0001316_3082_3393	F045836	AGGA	MDNPSLFTALAYYTVSGFLDPIQWLLCGICGWSVERLDQSMIAGAAMVSVLYIAMAAFYPDGKLFSFPTPHVGIAILGKAIGAVLMTGLIHWLKQRQLNRKKS
Ga0370507_0001316_3687_4178	F034230	GGAGG	MRKDLLVFMLAGVFLIGIAAVAQVAEAGPENDKLKVKVGPFFIQESEKKINLEGTTPHVVRKGKRINITVTIENYGKEKSDPVRLKYVETGKKAGEPRFYRVQAIEPGKKWERTFMARFDESGRKSVTATLVTLENQPLADEKGKPRPDTSHTGSVNLTVREM