Scaffold Ga0370498_000158

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370498_000158

Scaffold Ga0370498_000158

Overview

Basic Information
Taxon OID	3300034155 Open in IMG/M
Scaffold ID	Ga0370498_000158 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26237
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (54.84%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9142	Long. (^o)	-147.8349	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059255	Metagenome	134	Y
F080657	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370498_000158_23144_23731	F080657	GGAGG	MKRTVILGATALVLIASAVYTFGDIARPKTSPSPQEGKVVFHTGLKIVPDAKAYEARLQISQETLQRLREATDSKSAANGSMTERLMQSSTRTVMAGMFMFLAISFAGVWLARSSQRRSQKAVAAIVMILGMLGTATVIVRANAGPPGYYYWQNLPQNLTQGKETRGGLDIEVVAGDDNIKLIVPMKNAKKPGEE
Ga0370498_000158_34_309	F059255	N/A	MIVAGQRVGQVGPDGGTSSGFGSVVNARPVPSAGVGALIAVIRMANGQLSQPYLVGPQLAGTIPVDGRLILLINDDNYNDNSGSFSVRIRY

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