Scaffold Ga0364929_0000200

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0364929_0000200

Scaffold Ga0364929_0000200

Overview

Basic Information
Taxon OID	3300034149 Open in IMG/M
Scaffold ID	Ga0364929_0000200 Open in IMG/M
Source Dataset Name	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11461
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9229	Long. (^o)	-106.9499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017237	Metagenome / Metatranscriptome	242	Y
F087001	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364929_0000200_10398_10583	F017237	AGG	MAMAVITVASGGLPVIDVTATTPKLGMAVTEAVAVATVKRGVAVTKVTAYGLPVTFVVPS
Ga0364929_0000200_4651_4860	F087001	AGGAGG	VIIHNGDHAAFEVEHANTKPEDRPDWPMPSFDARDWARAFVKMHGGDEGLMLTWFASALMRGYDEGIKR

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