Scaffold Ga0364925_0015239

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0364925_0015239

Scaffold Ga0364925_0015239

Overview

Basic Information
Taxon OID	3300034147 Open in IMG/M
Scaffold ID	Ga0364925_0015239 Open in IMG/M
Source Dataset Name	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2385
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9229	Long. (^o)	-106.9499	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012809	Metagenome / Metatranscriptome	277	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364925_0015239_1080_1337	F012809	N/A	VQRGIGEESVLQDIHQRALRRAAEIVGSNEGLRIHLGASETEFASWPGQRELPRDVFLRLVDIITEEEVCTVRGYRPARKALASS

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