NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364925_0014328

Scaffold Ga0364925_0014328


Overview

Basic Information
Taxon OID3300034147 Open in IMG/M
Scaffold IDGa0364925_0014328 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 44_j17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2450
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006963Metagenome / Metatranscriptome361Y
F027343Metagenome / Metatranscriptome195N

Sequences

Protein IDFamilyRBSSequence
Ga0364925_0014328_1325_1831F027343N/AMTSLMNERLSAMRCLFCNAEMVLMEAVQADPTTLPSFEHRTFLCLACHRVERRLAYAGARAPSATSHSASPTTKLNIGSGMPQSAWSRAVEKVLHKQIELNGRTAAKRRPDIPSTVEKVGSGRRNAEERPRPSTKKSIDLVSELNRIWDDPRPAADKRFEPPATPKAE
Ga0364925_0014328_876_1181F006963AGGVVSQGLLDLDDDERNASFTLILKESDRRCDQVIRTLFTGTLLGVDEWEALCKDRNAYSISVLVEPDGTTITSLTCRELLATSKRLLHKAGSRSRAVGCRIK
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