NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334962_000001

Scaffold Ga0334962_000001


Overview

Basic Information
Taxon OID3300034144 Open in IMG/M
Scaffold IDGa0334962_000001 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 58SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)884216
Total Scaffold Genes734 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)500 (68.12%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033948Metagenome / Metatranscriptome176Y
F039537Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0334962_000001_218929_219174F033948AGGAGMTDDKQAKSSLGERNRDPDVNPDTKPNATEELSPANEERAIDIGESGQFAPGGRYNELGATAPRRIDLDEQVDSALKNEDK
Ga0334962_000001_54637_54954F039537AGGAGMVSKKSQSKAGIAERRRGQQMGDDRSAPDKTLEAKQETPALSGRRKSASKFFADESSQNTGARPETPRDNTPSTPAAIPTGEKLGESDGERSFKERHSGARKKGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.