Scaffold Ga0334959_001258

Overview

Basic Information

• Taxon OID: 3300034142
• Scaffold ID: Ga0334959_001258
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 55SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7433
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014784	Metagenome / Metatranscriptome	260	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334959_001258_2588_3349	F014784	AGGAG	MSNWHEDRTGKLREFFALDAGRELVAADTTAKFELRPEMDEGLRHFNIEWHVVPAAEAVPLDDDYFARLYPSAPHDFTKTREHGHNYRQQLLKGHARHQGRVVGVETTAKPRYLPGNRQFYGTTYGHDATADPFAAYMGRAGMMNGMRYAHNYLSLRAFLNVVNEDWRARRLLPAGYRVTVCPPAVFNLVGTVFHPEWSETETLELGFYRDEQGNATCFAVGSNAPGEFSYINEVEGESEWSLMGFRLALVPD