Scaffold Ga0334956_040535

Overview

Basic Information

• Taxon OID: 3300034139
• Scaffold ID: Ga0334956_040535
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 52SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 751
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047622	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334956_040535_25_252	F047622	AGTAGG	VVALLRAGFWFDEVNPFGPLQEYVAPLTVGVNSAIVAPSQYGPLFDAAGVAGVAFTTTFVVPAADVQPLTVTVTE
Ga0334956_040535_268_456	F047622	N/A	VKPFGPVQEYVAPLTVGVDSAIVAPSQYGPPFDAVGVAGIAFTTTFVVPAADVQPSTVTVTE
Ga0334956_040535_511_699	F047622	GAG	VKPFGPVHEYVAPLTVGVDSAIVAPSQYGPPFDAVGVAGAGFTTTFVVPAADVQPLTVTVTE