Scaffold Ga0334956_000578

Overview

Basic Information

• Taxon OID: 3300034139
• Scaffold ID: Ga0334956_000578
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 52SNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12560
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004033	Metagenome / Metatranscriptome	456	Y
F020065	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334956_000578_1152_1619	F004033	AGG	MKKIVVGIALLLVSMVGFAQTAATPQITPPSNGDEWLRLSSTEKLFWSIGYAQGYQEALDKIDVTAGPTSPCASLAARTERQTSTSGKVSGFELVSGLERFYADPANTVIPIGSAIRIYLLQASGKDQTTIQELIDTARTLGESAGRARATASRQ
Ga0334956_000578_7713_7886	F020065	GAG	MKKSQIQEIKEGRAMRERVYANRNQPFGPAAPLPTANAVRLSTVPSSAEEKYNGGRD