Scaffold Ga0334929_052950

Overview

Basic Information

• Taxon OID: 3300034135
• Scaffold ID: Ga0334929_052950
• Source Dataset Name: Biocrust microbial communities from Mojave Desert, California, United States - 25HNC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 839
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Sphaeropleales → Selenastraceae → Monoraphidium → Monoraphidium neglectum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000818	Metagenome / Metatranscriptome	878	Y
F020088	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334929_052950_229_390	F020088	AGGAG	MQKSRFNIQKLEPRIAPAIISVNPAGNQPQGDAQGKAIEAQNPAGKAPAGQNK
Ga0334929_052950_471_662	F000818	AGGAGG	MNDQSKNSEKKPRFNVVKLEQRIAPAITVSHVNGGGNTPNGQANGVPTVATNPAGHAPPGQNA