Scaffold Ga0334929_025409

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0334929_025409

Scaffold Ga0334929_025409

Overview

Basic Information
Taxon OID	3300034135 Open in IMG/M
Scaffold ID	Ga0334929_025409 Open in IMG/M
Source Dataset Name	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1265
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.3778	Long. (^o)	-117.6098	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y
F007252	Metagenome / Metatranscriptome	354	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334929_025409_109_549	F007252	AGTAG	MNNKVHPFFENVTLWDFNMKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPCAPPVITSRHLSESLSGEELKEFLAKKKVRKLAEKVMCGDERVVVSDKTFAAFDIFEVPPPQKARSSNR
Ga0334929_025409_895_1263	F001042	N/A	IEGNLESDFYKDSETEANDKIVIDKLLVNKLTELLINSIYSVNISRRSEIFLTSLDMHLAENSVSNKNNKASREFTEKSSLLLESYQKAVPKLLGKVESCLEEAIDLINLVVSASVAGGENG

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