NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334915_081554

Scaffold Ga0334915_081554


Overview

Basic Information
Taxon OID3300034132 Open in IMG/M
Scaffold IDGa0334915_081554 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 11HMC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)665
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021175Metagenome220Y
F082255Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0334915_081554_328_648F021175GGGGGMALLPVRRRKLVISLLASLGLCLDILMDTEADFIKEIRYLAGLMRQNCHDASWRMERLLSMVERGESLDTRSTPTQLQEARDELQLLRRGIEGIEKLCEMEMGDSR
Ga0334915_081554_93_329F082255AGGAGMYPDPQGLEDISSIRDAMRQISLEAQAVVELLDTRIDEEHLDGRTEAEDIRSVLELIQSLTLEVREDLDAYQRRYSEH
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