NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334911_022711

Scaffold Ga0334911_022711


Overview

Basic Information
Taxon OID3300034131 Open in IMG/M
Scaffold IDGa0334911_022711 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081908Metagenome / Metatranscriptome114Y
F084448Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0334911_022711_454_600F081908AGGAVPALLAHYGGLDETAVIWVPLIMIGGLWWILRGGDPKEGDQPPPEETR
Ga0334911_022711_597_866F084448GGAGGMSNFAHGLFPGWLSFVMLLPFLMLGFGLWFICRAFTDRGGARQEADPQDRARVIPLPDRTQQPLYRVHQQIQASARPPPKPQPDEPDRGS

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